Paixao VF, Sosa OJ, Pellegrina DVS, Dazzani B, Correa TB, Bertoldi ER, Moraes LBCEA, Pessoa DO, Oliveira VP, Zevallos RAC , Russo LC, Forti FL, Ferreira JE, Freitas HC, Jukemura J, Machado Marcel CC, Begnami MD, Setubal JC, Basseres DS, Reis EM (2022) Annotation and functional characterization of long noncoding RNAs deregulated in pancreatic adenocarcinoma. Cellular Oncology,  v. 45, p. 479-504.

Rius  FE, Papaiz DD, Azevedo H,  Ayub  ALP, Pessoa  DO,  Oliveira TF, Loureiro APM, Andrade F, Fujita  A, Reis EM, Mason C,  Jasiulionis MG (2022) Genome-wide promoter methylation profiling in a cellular model of melanoma progression reveals markers of malignancy and metastasis that predict melanoma survival. Clinical Epigenetics, v. 14, article 68

Cerqueira OLD, Botelho MCS, Fiore APZP, Osorio CA, Tomasin R, Morais MCC, Lopez RVM, Cardoso EC, Vilella-Arias Santiago A, Reis EM*, Bruni-Cardoso A (2022) Prognostic value of integrin αV expression and localization pattern in invasive breast carcinomas. Neoplasia, v.30 article 100803. *co-corresponding author

Moraes BC, Ribeiro-Filho HV, Roldão AP, Toniolo EF, Carretero GPB, Sgro GG, Batista FAH, Berardi DE, Oliveira VRS, Tomasin R, Vieceli FM, Pramio DT, Bruni-Cardoso A, Figueira ACM, Farah SC, Devi LA, Dale CS, De Oliveira, Paulo SL, Schechtman D (2022) Structural analysis of TrkA mutations in patients with congenital insensitivity to pain reveals PLCγ as an analgesic drug target. Science Signaling, v. 15, p. 1-15.

Papaiz DD, Rius FE, Ayub ALP, Origassa CS, Gujar H, Pessoa DO, Reis EM, Nsengimana J, Newton-Bishop J, Mason C, Weisenberger DJ, Liang G, Jasiulionis MG (2022). Genes regulated by DNA methylation are involved in distinct phenotypes during melanoma progression and are prognostic factors for patients. Molecular Oncology, v.16, p.1913-1930

Russo LC, Tomasin R, Matos IA, Manucci AC, Sowa S T, Dale K, Caldecott KW, Lehtiö L, Schechtman D, Meotti FC, Bruni-Cardoso A, Hoch NC (2021) The SARS-CoV-2 Nsp3 macrodomain reverses PARP9/DTX3L-dependent ADP-ribosylation induced by interferon signalling. Journal of Biological Chemistry, v. 297, p. 101041.

Lefthériotis G, Wray S, Girardi ACC, Vidal-Petiot E, Bailey MA, Schechtman D, Ravi N, Noble D (2021) Editorial: The Tribute of Physiology for the Understanding of COVID-19 Disease. Frontiers in Physiology, v. 12, p. 1-1

Duarte ML, Trimbake NA, Gupta A, Tumanut C, Fan X, Woods C, Ram A, Gomes I, Bobeck EN, Schechtman D, Devi LA (2021) High-throughput screening and validation of antibodies against synaptic proteins to explore opioid signaling dynamics. Communications Biology, v. 4, p. 238

Zevallos RAC , Reis, EM. Book chapter: Noncoding gene families of the human genome. In: Human Genome Structure, Function and Clinical Considerations. 1ed.: Springer, 2021, v. 1, p. 139-180

Glezer I, Bruni-Cardoso A, Schechtman D, Malnic B (2020) Viral infection and smell loss: The case of COVID-19. Journal of Neurochemistry, v. 157, p. 930-943

Azevedo H, Pessoa GC, De Luna V, Francisca N, Nsengimana J, Newton-Bishop, J, Reis EM, Da Cunha JPC, Jasiulionis MG (2020) Gene co-expression and histone modification signatures are associated with melanoma progression, epithelial-to-mesenchymal transition, and metastasis. Clinical Epigenetics 12:127.

Gomes-Filho, S. M. , Santos, E. O. , Bertoldi, E. R. , Heidrich, V. , Dazzani, B. , Reis, E.M. , Basseres, D.S. (2020) Aurora A Kinase and its Activator TPX2 are Potential Therapeutic Targets in KRAS-Induced Pancreatic Cancer. Cellular Oncology 43: 445–460

Griesi-Oliveira K, Fogo MS, Pinto BGG, Alves AY, Suzuki AM, Morales AG, Ezquina S, Sosa OJ, Sutton GJ, Sunaga-Franze DY, Bueno AP, Seabra G, Sardinha L, Costa SS, Rosenberg C, Zachi EC, Sertie AL, Martins-De-Souza D, Reis EM, Voineagu I, Passos-Bueno MR (2020) Transcriptome of IPSC-Derived Neuronal Cells Reveals a Module of Co-Expressed Genes Consistently Associated with Autism Spectrum Disorder. Molecular Psychiatry, 26:1589–1605.

Carneiro-Lobo TC, Scalabrini LC, Magalhães LS, Cardeal LB, Rodrigues FS, dos Santos EO, Baldwin AS, Levantini E, Giordano RJ, Bassères DS. IKKb targeting reduces KRAS-induced lung cancer angiogenesis in vitro and in vivo: a potential anti-angiogenic therapeutic target. Lung Cancer 130: 169-178.

De Miranda MC, Rodrigues MA, De Angelis CAC, Faria JAQA, Kunrath-Lima M, Mignery GA, Schechtman D, Goes AM, Nathanson MlH, Gomes DA (2019) Epidermal growth factor (EGF) triggers nuclear calcium signaling through the intranuclear phospholipase C delta-4 (PLCδ4). Journal of Biological Chemistry, v. 294, p. 16650-16662.

Pena D, Pacheco DM, Oliveira PSL, Alves, MJM, Schechtman D (2018). Generating Conformation-Specific Polyclonal and Monoclonal Anti-Protein Kinase C Antibodies and Anti-Active State Specific PKC Antibodies. Current Protocols in Chemical Biology, v. 1, p. e42

Pena DA, Duarte ML, Pramio DT, Devi LA, Schechtman D (2018) Exploring Morphine-Triggered PKC-Targets and Their Interaction with Signaling Pathways Leading to Pain via TrkA. Proteomes, v. 6, p. 39

Teixeira FR, Manfiolli AO, Vieira NA, Medeiros AC, Coelho PO, Santiago Guimarães D, Schechtman D, Gomes MD. FBXO25 regulates MAPK signaling pathway through inhibition of ERK1/2 phosphorylation. Arch Biochem Biophys. 2017 May 1,621:38-45.

Valenzuela-Oses JK, García MC, Feitosa VA, Pachioni-Vasconcelos JA, Gomes-Filho SM, Lourenço FR, Cerize NNP, Bassères DS, Rangel-Yagui CO. Development and characterization of miltefosine-loaded polymeric micelles for cancer treatment. Mater Sci Eng C Mater Biol Appl. 2017 Dec 1,81:327-333.

Pellegrina, D. V. S., Severino, P., Barbeiro, H. V., de Souza, H. P., Machado M. C.C, da Silva F.P., Reis E. M. (2017) Insights into the Function of Long Noncoding RNAs in Sepsis Revealed by Gene Co-Expression Network Analysis. Non-Coding RNA 3:1-5.

Chevalier MT, García MC, Gonzalez D, Gomes-Filho SM, Bassères DS, Farina H, Alvarez VA. Preparation, characterization and in vitro evaluation of ε-polylysine-loaded polymer blend microparticles for potential pancreatic cancer therapy. J Microencapsul. 2017 Sep 3:1-10.

Yong KJ, Bassères DS, Welner RS, Zhang WC, Yang H, Yan B, Alberich-Jorda M, Zhang J, de Figueiredo-Pontes LL, Battelli C, Hetherington CJ, Ye M, Zhang H, Maroni G, O'Brien K, Magli MC, Borczuk AC, Varticovski L, Kocher O, Zhang P, Moon YC, Sydorenko N, Cao L, Davis TW, Thakkar BM, Soo RA, Iwama A, Lim B, Halmos B, Neuberg D, Tenen DG, Levantini E.  Targeted BMI1 inhibition impairs tumor growth in lung adenocarcinomas with low CEBPα expression. Sci Transl Med. 2016 Aug 3,8(350):350ra104.

dos Santos EO, Carneiro-Lobo TC, Aoki MN, Levantini E, Bassères DS. Aurora kinase targeting in lung cancer reduces KRAS-induced transformation. Mol Cancer, 15:12.

Oliveira PS, Ferraz FAN, Pena DA, Pramio DT, Morais FA & Schechtman D. Revisiting protein kinase–substrate interactions: Toward therapeutic development. Sci, Signal. 22 Mar, 2016 Re3

Pena DA, Andrade VP, Silva GÁ, Neves JI, Oliveira PS, Alves MJ, Devi LA & Schechtman D. Rational design and validation of an anti-protein kinase C active-state specific antibody based on conformational changes. Sci Rep. 2016 Feb 25,6:22114.

Canevari R.A., Marchi F.A., Domingues M.A.C., Andrade V.P., Caldeira J.R.F., Verjovski-Almeida S., Rogatto S.R., Reis E.M. (2016) Identification of novel biomarkers associated with poor patient outcomes in invasive breast carcinoma. Tumor Biology,: p. 1-16.

Qvit N, Schechtman D, Pena DA, Berti DA, Soares CO, Miao Q, Liang LA, Baron LA, Teh-Poot C, Martínez-Vega P, Ramirez-Sierra MJ, Churchill E, Cunningham AD, Malkovskiy AV, Federspiel NA, Gozzo FC, Torrecilhas AC, Manso Alves MJ, Jardim A, Momar N, Dumonteil E, Mochly-Rosen D. Scaffold proteins LACK and TRACK as potential drug targets in kinetoplastid parasites: Development of inhibitors. Int J Parasitol Drugs Drug Resist. 2016 Feb 12,6(1):74-84.

Ayupe A.C., Tahira, A. C., Camargo L., Beckedorff F.C., Verjovski-Almeida S., Reis E. M. (2015) Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome. RNA biology 12: 877-892.

Pellegrina, D. V. S., Severino, P., Barbeiro, H. V., Andreghetto, F. M., Velasco, I. T., de Souza, H. P., Machado M. C.C, Reis E. M., da Silva F.P. (2015) Septic shock in advanced age: transcriptome analysis reveals altered molecular signatures in neutrophil granulocytes. PloS ONE 10: e0128341

Cerqueira O. L. D., Truesdell P., Baldassarre T., Vilella-Arias S. A., Watt K., Meens J., Chander H., Osório C.A. B., Soares F. A., Reis E. M *, Craig A.W. B. (2015) CIP4 promotes metastasis in triple-negative breast cancer and is associated with poor patient prognosis Oncotarget 6: 9397 *corresponding author

Bassères DS, Ebbs A, Cogswell PC, Baldwin AS. IKK is a therapeutic target in KRAS-induced lung cancer with disrupted p53 activity. Genes Cancer 5(1-2):41-55, 2014.

Dan HC, Ebbs A, Pasparakis M, Van Dyke T, Bassères DS, Baldwin AS. Akt-Dependent Activation of mTORC1 Involves Phosphorylation of mTOR by IKKalpha. J Biol Chem, 289(36):25227-40, 2014.

Duarte ML, Pena DA, Nunes Ferraz FA, Berti DA, Paschoal Sobreira TJ, Costa-Junior HM, Abdel Baqui MM, Disatnik MH, Xavier-Neto J, Lopes de Oliveira OS & Schechtman D. Protein folding creates structure-based, noncontiguous consensus phosphorylation motifs recognized by kinases. Sci Signal. 2014 Nov 4,7(350):ra105.

Vilella-Arias, S.A. , Rocha, R.M. , Costa, W.H. , Zequi, S.C. , Guimarães, G.S. , Verjovski-Almeida, S , Soares, F.A. , Reis E.M. (2013). Loss of Caspase 7 expression is associated with poor prognosis in renal cell carcinoma clear cell subtype. Urology, 82: 974.e1–974.e7.

Beckedorff F.C., Ayupe A.C., Crocci-Souza R., Amaral M.S., Nakaya H. I.,. F., Soltys D.T, Menck C.F.M., Reis E. M., Verjovski-Almeida S. (2013). The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation. PLOS Genetics, 9: e1003705.

Gras. D.E., Persinoti, G.F., Peres, N.T.A., Martinez-Rossi, N.M., Tahira, AC., Reis, E.M., Prade, R.A., Rossi. A. (2013). Transcriptional profiling of Neurospora crassa Δmak-2 reveals that mitogen-activated protein kinase MAK-2 participates in the phosphate signaling pathway. Fungal Genetics and Biology, in Press.

Reis E.M., Verjovski-Almeida S. (2012) Perspectives of Long Non-Coding RNAs in Cancer Diagnostics. Frontiers in Genetics, 3:1-8.

 Garavello NM, Pena DA, Bonatto JM, Duarte ML, Costa-Junior HM, Schumacher RI, Forti FL & Schechtman D. Activation of protein kinase C delta by ψδRACK peptide promotes embryonic stem cell proliferation through ERK 1/2. J Proteomics. 2013 Dec 6,94:497-512.

Fachel, A.A., Tahira, A. C., Vilella-Arias, S.A., Maracaja-Coutinho, V. , Gimba, E.R., Vignal, G.M., Campos, F.S., Reis, E. M., Verjovski-Almeida, S. (2013). Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations. Molecular Cancer, 12:140, 2013.

Tahira A.C., Kubrusly M.S., Faria M.F., Dazzani B., Fonseca R.S., Maracaja-Coutinho V., Verjovski-Almeida S., Machado M.C., Reis E.M. (2011). Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Molecular Cancer,10:141.

Levantini E, Lee S, Radomska HS, Hetherington CJ, Alberich-Jorda M, Amabile G, Zhang P, Gonzalez D, Zhang J, Bassères DS, Wilson NK, Koschmieder S, Huang G, Zhang D, Ebralidze AK, Bonifer C, Okuno Y, Gottgens B, Tenen DG. RUNX proteins regulate gene expression in long-term hematopoietic stem cells by mediating interaction of distal and proximal regulatory elements. EMBO J, 30: 4059-4070, 2011.

Chudzinski-Tavassi, A.M., De-Sa-Junior, L., Simons, S.M., Maria, D.A., Ventura, J.S., Batista, I.F.C., Faria, F., Duraes, E.O., Reis, E.M., Demasi, M. (2010). A new tick Kunitz type inhibitor, Amblyomin-X, induces tumor cell death by modulating genes related to the cell cycle and targeting the ubiquitin-proteasome system. Toxicon, 56:1145–1154

Ferrari M.F.R., Reis E.M.,  Matsumoto J.P.P.,  Fior-Chadi D.R. (2010). Transcriptome analysis of nicotine-exposed cells from the brainstem of neonate spontaneously hypertensive and Wistar Kyoto rats, The Pharmacogenomics Journal, 10, 134-160.

Bassères DS, Ebbs A, Levantini E and Baldwin A. Requirement of the NF-kB Subunit p65/RelA for K-Ras-Induced Lung Tumorigenesis. Cancer Res, 70 (9): 3537-3546, 2010.

Costa-Junior HM, Garavello NM, Duarte ML, Berti DA, Glaser T, de Andrade A, Labate CA, Ferreira AT, Perales JE, Xavier-Neto J, Krieger JE, Schechtman D. Phosphoproteomics profiling suggests a role for nuclear βΙPKC in transcription processes of undifferentiated murine embryonic stem cells. J Proteome Res. 2010 Dec 3,9(12):6191-206.

Colombo J., Fachel A.A., Calmon M.F., Cury P.M., Fukuyama E.E., Tajara E.H., Cordeiro J.A., Verjovski-Almeida, S., Reis E.M., Rahal P. (2009). Gene expression profiling reveals molecular marker candidates of laryngeal squamous cell carcinoma. Oncology Reports, 21:649-63.

Ferrari M.F.R., Reis E.M.,  Matsumoto J.P.P.,  Fior-Chadi D.R. (2009). Gene expression profiling of cultured cells from brainstem of newborn spontaneously hypertensive and Wistar Kyoto rats, Cellular and Molecular Neurobiology, 29:287-308.

Brito G.C.,  Fachel A. A., Vettore A. L., Vignal G.M., Gimba E., Campos F.S., Barcinski M.A., Verjovski-Almeida S., Reis E.M. (2008) Identification of protein-coding and intronic noncoding RNAs downregulated in clear cell renal carcinoma, Molecular carcinogenesis, 47:757-67.

Louro R., El-Jundi T., Nakaya H.I., Reis E.M., Verjovski-Almeida S. (2008). Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci., Genomics, 92:18-25.

Igreja C., Caiado F., Clode N., Henriques A., Camargo L., Reis E.M., Dias, S. (2008). Detailed molecular characterization of cord blood derived endothelial progenitors. Experimental Hematology, 36:193-203.

Costa-Junior HM, Suetsugu MJ, Krieger JE & Schechtman D. Specific modulation of protein kinase activity via small peptides. Regul Pept. 2009 Feb 25,153(1-3):11-8. doi: 10.1016/j.regpep.2008.12.002. Epub 2008 Dec 16. Review.

Nakaya H. I., Beckedorff F. C. F., Baldini M. L., Fachel A. A., Reis E. M., Verjovski-Almeida S. (2007). Splice variants of TLE family genes and up-regulation of a TLE3 isoform in prostate tumors. Biochemical and Biophysical Research Communications, 364:918-923,

Fanganiello, R. D. , Sertie, A. L. , Reis, E.M. , Yeh, E. , Oliveira, N. , Bueno, D. F. , Kerkis, I. , Alonso, N. , Cavalheiro, S. , Matsushita, H. , Verjovski-Almeida, Sergio , Bueno, M. R. P. (2007). Apert p.Ser252Trp mutation in FGFR2 alters osteogenic potential and gene expression of cranial periosteal cells. Molecular Medicine, 13:422-42.

Nakaya H.I., Amaral P.P., Louro R., Lopes A., Fachel A.A., Moreira Y.B., El-Jundi T.A., da Silva A.M., Reis E.M. and Verjovski-Almeida S. (2007). Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biology, 8:R43.

Louro R., Nakaya H.T., Amaral P.P., Festa F., Sogayar M.C., da Silva A.M. and Verjovski-Almeida and Reis E.M. (2007) Androgen responsive intronic non-coding RNAs,  BMC Biology, 5:4.